Definition
Standing waters occur either where the drainage is impeded, e.g. by glacial deposition or deepening in valleys, by the build-up of peat in mire systems, where water accumulates in kettle-holes and other depressions such as the Shropshire/Cheshire meres and the Norfolk Broads, or where man has created artificial dams or barriers of various kinds.
The overwhelming factor affecting the flora and fauna of standing waters is the chemical content of the water. A large number of elements and compounds are found dissolved in natural waters, and include trace elements and certain organic compounds which limit plant growth under culture conditions, but about which little is known in the field. In general, however, the primary production (and hence in most cases also the secondary production) of a waterbody is related to its alkalinity. This relationship is partially explained by the direct relationship between alkalinity and the concentration of dissolved major plant nutrients, nitrogen and phosphorus. Phosphate is commonly the factor limiting the algal primary production in fresh water in Britain. Alkalinity is a more convenient and constant measure of productive level, however, as the dissolved plant nutrients (phosphate, nitrate, nitrites and ammonia) vary considerably in their concentrations over the seasons, depending upon their uptake by plants, sedimentation in organic form, and release from the sediment. Nitrogen and phosphorus also occur in organic and inorganic states in many different forms, thereby adding to the difficulties of chemical analysis and interpretation. Water pH has often been used as a measure of the productive level of water-bodies, but this can vary greatly according to photosynthetic activity, particularly during the summer months.
Summer pHs are not a reliable guide to the trophic status of standing water. Because of the low alkalinity of most oligotrophic lakes, any substantial algal growth will raise the pH far above 7; indeed 10 would be quite possible. The very reasons which permit wide fluctuations in pH in oligotrophic systems during the summer tend to damp down the pH fluctuations in eutrophic systems and there are few eutrophic bodies of water in which the pH is raised as high as 11 by photosynthesis.
Bodies of standing water have generally been classified into unproductive and productive types, to which the terms oligotrophic and eutrophic, respectively, have become applied. A third category, which has an intermediate alkalinity and productivity has been termed mesotrophic. Further categories are required to accommodate those systems where, because of special chemical conditions, the relationship between alkalinity and nutrient content does not apply. Sodium rather than calcium may be the prevalent cation in some lakes, particularly in coastal regions, causing a high alkalinity, not necessarily accompanied by a high nutrient content. Those bodies of standing water  with a sodium concentration higher than that of calcium and a total ionic content and conductivity intermediate between that of fresh water and sea water, are termed brackish. In limestone regions, lakes have high alkalinities but, since phosphorus is generally present only in insoluble form, primary production in the form of phytoplankton is generally very low. The phosphorus is precipitated together with a deposit of calcium carbonate, known as marl, which coats the bottom substrate, and hence these examples are often termed marl lakes. A final category of of bodies of standing water distinguishes those where dissolved humic acids derived from acidic peat lower the pH to well below neutrality. Such systems are termed dystrophic and are generally extremely unproductive, although the nutrient content may be relatively high.
Although there is general acceptance of these six categories, the divisions between them are arbitrary and there is no general agreement as to their precise definition.
Within each of these major divisions lakes may be divided into further categories using other physical attributes, including depth, area, nature of shoreline, altitude and latitude. These attributes are all to some extent interdependent (for instance large lakes in northern Britain tend to be oligotrophic, deep and have stony shorelines, while eutrophic bodies of water in southern Britain tend to be shallow and have organic shorelines) so that the theoretically large number of possible lake categories can be reduced in practice.
In shallow waters, the depth to which light penetration enables plant growth to continue, the photic zone, may extend down to the bottom over the entire area. The exact depth of the photic zone depends on the clarity of the water, being greater for oligotrophic and marl lakes than for dystrophic and eutrophic waters. In general, the shallower the water the more important are the benthic plant communities and the animal communities dependent on them, whereas in deeper systems the major producers are plankton and dependent animal communities.
Depth is also important in relation to the establishment of thermal stratification. In deep lakes, a narrow transitional zone of relatively rapid temperature change occurs just below the depth to which the lake water is normally stirred by wind action. A density gradient is formed at this level which effectively prevents the transfer of water between the lower hypolimnion and the upper epilimnion until thermal stratification is broken down when the upper lake waters cool in autumn. This barrier, called the thermocline, forms at depths ranging from 5-25 m depending on the size of lake, and in large shallow lakes stable stratification does not occur. In shallower systems, wave action can extend down to the bottom, bringing the substrate into suspension and so preventing the establishment of an undisturbed sediment. In the deeper lakes, there is a progression of substrate types from eroded shorelines to soft muds in deeper water. The depth at which the transition from erosion to deposition takes place depends on the size of the lake and its exposure to the wind.
In large lakes, wind action becomes an increasingly important ecological factor, with its major effect upon the shallow littoral zone. Small, sheltered bodies of water generally have shorelines on which fine organic or mineral sediments are deposited, and here marginal vegetation may flourish. With increasing size and exposure, the shorelines become more eroding and thus more inhospitable for plant colonisation. With extreme wave action the shorelines may consist of barren storm beaches of unstable stones or gravel, or wave-washed stable bedrock.
Mean wind speeds increase both with increasing altitude and latitude, so that a small area of water in lowland southern Britain may have a depositing muddy shoreline with extensive reed-swamp development, while a body of standing watear of the same area and shape in the uplands of the north may be bounded by barren, stony, wave-washed shores. Mean water temperatures decrease with increasing altitude and latitude, and many species of aquatic plants and animals are restricted in their British distribution by their particular temperature requirements. In high- altitude lakes, ice scour at the time of melting restricts the colonisation of the shallow littoral by both plants and animals.
Within a deep lake there are four main habitat zones.
1. The open water, all depths inhabited by the plankton.
2. The profundal benthic zone which is in deep water beyond the depth of light penetration, where the bottom consists generally of fine organic mud, and where no plant production occurs.
3. The sublittoral benthic zone which is in shallower water and is the zone in which most macrophytes grow, the substrate being generally of fine sediments such as silt or mud.
4. The littoral benthic zone which is in the shallowest water at the margin of the lake where the effects of wave action are strong and the substrate consists of eroding mineral sediments such as sand, gravel, stones or boulders.
These divisions obviously grade into one another, but it is convenient to discuss the range of variation of the vegetation and invertebrate populations in terms of these zones, as each has its own distinctive communities. The depth at which the transition between the three benthic zones takes place is variable and depends on a number of factors such as water clarity, exposure and lake size. In shallow lakes the profundal may be absent, while in small sheltered waters where wave action is negligible, the sublittoral zone may extend up to the shoreline.
Because of the importance of depth and size to the physical characteristics of standing waters, it is practical to subdivide the above chemically based primary divisions into water-bodies with mean depths above and below 5 m, and with areas above and below 10 ha.